[INFO] cloning repository https://github.com/nucleohub/biobit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/nucleohub/biobit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnucleohub%2Fbiobit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnucleohub%2Fbiobit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 046d996c5751940fd737d570b8fd3e8635cd6155
[INFO] checking nucleohub/biobit against master#158f00a1c5175648af6f6099b075f78d1d014a28 for pr-121251
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnucleohub%2Fbiobit" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/nucleohub/biobit on toolchain 158f00a1c5175648af6f6099b075f78d1d014a28
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/nucleohub/biobit
[INFO] finished tweaking git repo https://github.com/nucleohub/biobit
[INFO] tweaked toml for git repo https://github.com/nucleohub/biobit written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/nucleohub/biobit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded hash32 v0.2.1
[INFO] [stderr]   Downloaded num v0.4.0
[INFO] [stderr]   Downloaded float_next_after v1.0.0
[INFO] [stderr]   Downloaded atomic-polyfill v0.1.11
[INFO] [stderr]   Downloaded geographiclib-rs v0.2.3
[INFO] [stderr]   Downloaded critical-section v1.1.1
[INFO] [stderr]   Downloaded geo-types v0.7.11
[INFO] [stderr]   Downloaded rstar v0.10.0
[INFO] [stderr]   Downloaded serde v1.0.159
[INFO] [stderr]   Downloaded libm v0.2.6
[INFO] [stderr]   Downloaded heapless v0.7.16
[INFO] [stderr]   Downloaded syn v2.0.13
[INFO] [stderr]   Downloaded geo v0.25.1
[INFO] [stderr]   Downloaded earcutr v0.4.2
[INFO] [stderr]   Downloaded serde_derive v1.0.159
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 906c3bc28cdc2f9edd1a2649654be7a0fca61b998523d5902fafae1595576181
[INFO] running `Command { std: "docker" "start" "-a" "906c3bc28cdc2f9edd1a2649654be7a0fca61b998523d5902fafae1595576181", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "906c3bc28cdc2f9edd1a2649654be7a0fca61b998523d5902fafae1595576181", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "906c3bc28cdc2f9edd1a2649654be7a0fca61b998523d5902fafae1595576181", kill_on_drop: false }`
[INFO] [stdout] 906c3bc28cdc2f9edd1a2649654be7a0fca61b998523d5902fafae1595576181
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 25da54927c829da4709a40fba9d6be9a46e9b723ec70e4689ca2e5b2acb1b43c
[INFO] running `Command { std: "docker" "start" "-a" "25da54927c829da4709a40fba9d6be9a46e9b723ec70e4689ca2e5b2acb1b43c", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling semver v1.0.17
[INFO] [stderr]     Checking either v1.8.1
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]     Checking smallvec v1.10.0
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]     Checking robust v0.2.3
[INFO] [stderr]     Checking float_next_after v1.0.0
[INFO] [stderr]     Checking geographiclib-rs v0.2.3
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking hash32 v0.2.1
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling lock_api v0.4.9
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling num-bigint v0.4.3
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling num-iter v0.1.43
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]     Checking spin v0.9.8
[INFO] [stderr]    Compiling heapless v0.7.16
[INFO] [stderr]     Checking biobit-core v0.0.2 (/opt/rustwide/workdir/modules/core)
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-complex v0.4.3
[INFO] [stderr]     Checking rstar v0.10.0
[INFO] [stderr]     Checking earcutr v0.4.2
[INFO] [stderr]     Checking geo-types v0.7.11
[INFO] [stderr]     Checking geo v0.25.1
[INFO] [stderr]     Checking num v0.4.0
[INFO] [stderr]     Checking biobit-alignment v0.0.2 (/opt/rustwide/workdir/modules/alignment)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2.90s
[INFO] running `Command { std: "docker" "inspect" "25da54927c829da4709a40fba9d6be9a46e9b723ec70e4689ca2e5b2acb1b43c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "25da54927c829da4709a40fba9d6be9a46e9b723ec70e4689ca2e5b2acb1b43c", kill_on_drop: false }`
[INFO] [stdout] 25da54927c829da4709a40fba9d6be9a46e9b723ec70e4689ca2e5b2acb1b43c
